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- 16S and 23S Ribosomal RNA Mutation Database
- 2D-PAGE
- 3D-Genomics
- 3D-Interologs
- 3D-Jury
- 3D-pssm
- 3D interacting domains
- 3D rRNA modification maps
- 3Dee Database of Protein Structural Domains
- 3Matrix
- 3Motif
- 4DXpress
- 5'SAGE
- 5S Ribosomal RNA Database
- @TOME
- AARSDB
- AAindex
- ABCdb
- ABS
- ACID
- ACMES
- ACTIVITY
- ACeDB
- AD-ENM
- ADVICE
- AGGRESCAN
- AGenDA
- AHMII
- AISMIG
- ALFRED
- ALFRED/NAR
- ALGGEN
- ALPSbase
- AMAZE
- AMIGene
- AMOD
- ANTIMIC
- AOBase
- ARAMEMNON
- ARAMEMNON/NAR
- ARED
- ARGO
- ARTADEdb
- ARTS
- AS2TS
- ASAP - Alternative spliced isoforms
- ASD - Alternative Splicing Database
- ASGS
- ASHESdb
- ASIAN